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Source: InCites
Abstract
Abbreviations: BIP, Brassica Information Portal BMS, Breeding Management System BrAPI, Breeding Application Programming Interface CDNO, crop dietary nutrition ontology ChEBI, Chemical Entities of Biological Interest CO, Crop Ontology FAIR, findable, accessible, interoperable, and reusable FCT/FCDB, food composition databases and tables FIX, physicochemical methods and properties GI, glycemic index GO, Gene Ontology MIAPPE, Minimum Information About Plant Phenotyping Experiments OBO, Open Biological and Biomedical Ontologies PO, Plant Ontology TD, trait dictionary TO, Trait Ontology
Meeting the challenge of food and nutritional security requires ongoing innovation, particularly in managing dietary nutritional information for pre‐breeding analysis, selection, and cultivation of specific food crops and cultivars. At present, the ability to compare the relative nutritional value of crops is limited, with data management systems for most crops often inconsistent and poorly integrated. Here, we review generic efforts to standardize the description and management of crop trait data and discuss several issues currently constraining their exchange and comparison, with a focus on knowledge representation related to dietary nutrition. These issues include lack of consistency within or between crop specific databases, as well as limited data standardization and interoperability. At present, the use of common descriptors or controlled vocabularies between crops is fragmentary, with only partial implementation or uptake of formal ontologies, particularly for dietary nutritional composition. Although development of the existing Crop Ontology (CO) system has improved data sharing and reuse, it represents only a limited set of trait classes and crops. We identify the need for more robust and generic ontologies, particularly those that may address crop contributions to human dietary nutrition. We propose development of a Crop Dietary Nutrition Ontology (CDNO) as a robust structured controlled vocabulary for dietary nutritional composition and function, and provide examples of specific use cases and different end users who would benefit from using CDNO terms in their database searches. This development is likely to transform the way in which crops may be compared in terms of optimal dietary nutritional values.
Details
Title
Knowledge representation and data sharing to unlock crop variation for nutritional food security
Creators
Liliana Andrés‐Hernández -
Southern Cross University