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A reduced-function BnaFLC.A2 haplotype confers early flowering without yield loss in semi-winter rapeseed (Brassica napus L.)
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A reduced-function BnaFLC.A2 haplotype confers early flowering without yield loss in semi-winter rapeseed (Brassica napus L.)

Shuai Yin, Yarui Wu, Dewei Mu, Yu Wang, Jizhao Yang, Qingdong Jin, Tianyuan Xue, Jindong Chen, Heping Wan, Graham John King, …
Industrial crops and products, Vol.250, pp.1-13
08/2026
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Abstract

Brassica napus Crop seasonality FLOWERING LOCUS C FLOWERING LOCUS T Vernalization
Ecotype differentiation in Brassica napus L. (canola, rapeseed) is primarily determined by vernalization requirement. However, the molecular mechanism through which haplotypes of key flowering genes—particularly BnaFLC.A2, along with BnaFLC.A10 and BnaFT.A2—cooperatively regulate flowering time across crop ecotypes remains poorly understood. Spatiotemporal expression profiling showed that BnaFLC.A2 and BnaFLC.A10 are highly expressed during vegetative growth in winter and semi-winter ecotypes, where they repress floral transition, while BnaFT.A2 is upregulated post-induction to promote flowering. Furthermore, BnaFLC.A2 protein forms both homodimers and heterodimers with BnaFLC.A10, which synergistically suppress BnaFT.A2 expression and collectively modulate flowering time. Population genetics analyses revealed that BnaFLC.A2 is highly conserved in winter and semi-winter ecotypes, in contrast to BnaFLC.A10, which shows signs of positive selection. To functionally validate the role of BnaFLC.A2, we developed near-isogenic lines (NILs) by introgressing the spring allele BnaFLC.A2Wes into a semi-winter background, replacing the alleles BnaFLC.A2Tar/ZS. This substitution significantly shortened flowering time by 20 days under field conditions in Wuhan, a moderate vernalization environment. Importantly, the NILs maintained relatively stable seed yield and oil content under normal sowing as well as under a 17-day delay in sowing. These results underscore the critical role of BnaFLC.A2 in agroecological adaptation, which is mediated by its temporally regulated expression and protein interactions. This study provides a strategic foundation for optimizing flowering time in B. napus breeding.

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