Files and links (2)
Published (Version of record)CC BY V4.0, Open Access
Published (Version of record)CC BY V4.0, Open
Journal article
1k-RiCA (1K-Rice Custom Amplicon) a novel genotyping amplicon-based SNP assay for genetics and breeding applications in rice
Rice, Vol.12(1), pp.1-15
12/2019
PMCID: PMC6660535
PMID: 31350673
Metrics
9 File views/ downloads
34 Record Views
UN Sustainable Development Goals (SDGs)
This output has contributed to the advancement of the following goals:
Source: InCites
Abstract
Background: While a multitude of genotyping platforms have been developed for rice, the majority of them have not been optimized for breeding where cost, turnaround time, throughput and ease of use, relative to density and informativeness are critical parameters of their utility. With that in mind we report the development of the 1K-Rice Custom Amplicon, or 1k-RiCA, a robust custom sequencing-based amplicon panel of ~ 1000-SNPs that are uniformly distributed across the rice genome, designed to be highly informative within indica rice breeding pools, and tailored for genomic prediction in elite indica rice breeding programs.
Details
- Title
- 1k-RiCA (1K-Rice Custom Amplicon) a novel genotyping amplicon-based SNP assay for genetics and breeding applications in rice
- Creators
- Juan David Arbelaez - International Rice Research Institute (Phillipines)Maria Stefanie Dwiyanti - Hokkaido UniversityErwin Tandayu - International Rice Research Institute (Phillipines)Krizzel Llantada - International Rice Research Institute (Phillipines)Annalhea Jarana - International Rice Research Institute (Phillipines)John Carlos Ignacio - International Rice Research Institute (Phillipines)John Damien Platten - International Rice Research Institute (Phillipines)Joshua Cobb - International Rice Research Institute (Phillipines)Jessica Elaine Rutkoski - International Rice Research Institute (Phillipines)Michael J Thomson - Texas A&M UniversityTobias Kretzschmar - Southern Cross University
- Publication Details
- Rice, Vol.12(1), pp.1-15
- Publisher
- Springer New York LLC
- Grant note
- OPP1076488 / ; The CGIAR research program on Rice (Rice CRP), and the Bill and Melinda Gates Foundation Transformation of Rice Breeding (TRB) in South Asia andSub-Saharan Africa projects sponsored and funded this work.
- Identifiers
- 991012925491702368
- Copyright
- © The Author(s). 2019 Open Access This article is distributed under the terms of the Creative Commons Attribution 4.0 International License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made.
- Academic Unit
- Faculty of Science and Engineering; School of Environment, Science and Engineering; Science; Southern Cross Plant Science
- Language
- English
- Resource Type
- Journal article